The "security and nonsecure items" message in IE is being caused by an issue in Dojo. For more, see the discussion on the WebWork forum
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There is a workaround available from the Dojo mailng list
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In short, line 79 in dojo/src/storage/browser.js
storeParts.push('codebase="http:');
should be replaced with
storeParts.push('codebase="https:');
Also try to search dojo.js and see if the following exists
_607.push("\tcodebase=\"http:
if it does should be replaced with
_607.push("\tcodebase=\"https: